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Cluster: Rep_3502_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3502_c_11 Rep_3502_c_11_30 34733 35518 + 8.A.3.2.4
TC Rep_3502_c_11 Rep_3502_c_11_31 35520 36317 + 8.A.3.2.1
TC Rep_3502_c_11 Rep_3502_c_11_32 36348 37844 + 9.B.18.1.2
CAZyme Rep_3502_c_11 Rep_3502_c_11_33 37844 38962 + GT4
CAZyme Rep_3502_c_11 Rep_3502_c_11_34 38965 40164 + GT4
pfam Rep_3502_c_11 Rep_3502_c_11_35 40166 41230 + Acyl_transf_3
pfam Rep_3502_c_11 Rep_3502_c_11_36 41223 42395 + Radical_SAM | SPASM
CAZyme Rep_3502_c_11 Rep_3502_c_11_37 42400 43665 + GT4
CAZyme Rep_3502_c_11 Rep_3502_c_11_38 43625 44710 + GT4
Gene ID: Rep_3502_c_11_30
Type: TC
Location: 34733 - 35518 (+)
Gene ID: Rep_3502_c_11_31
Type: TC
Location: 35520 - 36317 (+)
Gene ID: Rep_3502_c_11_32
Type: TC
Location: 36348 - 37844 (+)
Gene ID: Rep_3502_c_11_33
Type: CAZyme
Location: 37844 - 38962 (+)
Gene ID: Rep_3502_c_11_34
Type: CAZyme
Location: 38965 - 40164 (+)
Gene ID: Rep_3502_c_11_35
Type: pfam
Location: 40166 - 41230 (+)
Gene ID: Rep_3502_c_11_36
Type: pfam
Location: 41223 - 42395 (+)
Gene ID: Rep_3502_c_11_37
Type: CAZyme
Location: 42400 - 43665 (+)
Gene ID: Rep_3502_c_11_38
Type: CAZyme
Location: 43625 - 44710 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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