Cluster: Rep_3501_CGC7
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 10
- Substrate:
- Genome ID: Rep_3501
- CGC Family ID: CGCFAM_00005
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_21 | 25498 | 26502 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_22 | 26511 | 27494 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_23 | 27503 | 28447 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_24 | 28459 | 29421 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_25 | 29425 | 30411 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_26 | 30425 | 31423 | - | GT2 |
| pfam | Rep_3501_c_4 | Rep_3501_c_4_27 | 31442 | 32644 | - | EpsG |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_28 | 32654 | 33760 | - | GT4 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_29 | 33777 | 34760 | - | GT2 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_30 | 34776 | 35855 | - | GT4 |
| CAZyme | Rep_3501_c_4 | Rep_3501_c_4_31 | 35852 | 36988 | - | GT4 |
| TC | Rep_3501_c_4 | Rep_3501_c_4_32 | 37007 | 37645 | - | 9.B.18.1.3 |
| pfam | Rep_3501_c_4 | Rep_3501_c_4_33 | 37638 | 38462 | - | HpcH_HpaI |
| TC | Rep_3501_c_4 | Rep_3501_c_4_34 | 38679 | 40070 | + | 2.A.22.5.3 |
Gene ID: Rep_3501_c_4_21
Type: CAZyme
Location: 25498 - 26502 (-)
Type: CAZyme
Location: 25498 - 26502 (-)
Gene ID: Rep_3501_c_4_22
Type: CAZyme
Location: 26511 - 27494 (-)
Type: CAZyme
Location: 26511 - 27494 (-)
Gene ID: Rep_3501_c_4_23
Type: CAZyme
Location: 27503 - 28447 (-)
Type: CAZyme
Location: 27503 - 28447 (-)
Gene ID: Rep_3501_c_4_24
Type: CAZyme
Location: 28459 - 29421 (-)
Type: CAZyme
Location: 28459 - 29421 (-)
Gene ID: Rep_3501_c_4_25
Type: CAZyme
Location: 29425 - 30411 (-)
Type: CAZyme
Location: 29425 - 30411 (-)
Gene ID: Rep_3501_c_4_26
Type: CAZyme
Location: 30425 - 31423 (-)
Type: CAZyme
Location: 30425 - 31423 (-)
Gene ID: Rep_3501_c_4_27
Type: pfam
Location: 31442 - 32644 (-)
Type: pfam
Location: 31442 - 32644 (-)
Gene ID: Rep_3501_c_4_28
Type: CAZyme
Location: 32654 - 33760 (-)
Type: CAZyme
Location: 32654 - 33760 (-)
Gene ID: Rep_3501_c_4_29
Type: CAZyme
Location: 33777 - 34760 (-)
Type: CAZyme
Location: 33777 - 34760 (-)
Gene ID: Rep_3501_c_4_30
Type: CAZyme
Location: 34776 - 35855 (-)
Type: CAZyme
Location: 34776 - 35855 (-)
Gene ID: Rep_3501_c_4_31
Type: CAZyme
Location: 35852 - 36988 (-)
Type: CAZyme
Location: 35852 - 36988 (-)
Gene ID: Rep_3501_c_4_32
Type: TC
Location: 37007 - 37645 (-)
Type: TC
Location: 37007 - 37645 (-)
Gene ID: Rep_3501_c_4_33
Type: pfam
Location: 37638 - 38462 (-)
Type: pfam
Location: 37638 - 38462 (-)
Gene ID: Rep_3501_c_4_34
Type: TC
Location: 38679 - 40070 (+)
Type: TC
Location: 38679 - 40070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp017886765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.