Cluster: Rep_3501_CGC5
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_3501
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3501_c_3 | Rep_3501_c_3_47 | 48274 | 49875 | + | GH30_4 |
| NULL(UNKNOWN) | Rep_3501_c_3 | Rep_3501_c_3_48 | 49974 | 50291 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3501_c_3 | Rep_3501_c_3_49 | 50387 | 50869 | - | Amidase_6 |
| TC | Rep_3501_c_3 | Rep_3501_c_3_50 | 51017 | 52633 | - | 8.A.7.1.1 |
| STP | Rep_3501_c_3 | Rep_3501_c_3_51 | 52714 | 52977 | - | PTS-HPr |
| TC | Rep_3501_c_3 | Rep_3501_c_3_52 | 52994 | 54925 | - | 4.A.2.1.7 |
| STP | Rep_3501_c_3 | Rep_3501_c_3_53 | 54955 | 55875 | - | PfkB |
| TF | Rep_3501_c_3 | Rep_3501_c_3_54 | 55875 | 56621 | - | HTH_DeoR |
| CAZyme | Rep_3501_c_3 | Rep_3501_c_3_55 | 56901 | 58874 | - | GH2 |
| TC | Rep_3501_c_3 | Rep_3501_c_3_56 | 59029 | 59964 | + | 1.A.35.3.2 |
| pfam | Rep_3501_c_3 | Rep_3501_c_3_57 | 60006 | 60500 | + | DNA_binding_1 | Methyltransf_1N |
| CAZyme | Rep_3501_c_3 | Rep_3501_c_3_58 | 60547 | 61965 | - | GT5 |
| pfam | Rep_3501_c_3 | Rep_3501_c_3_59 | 61976 | 63094 | - | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_3501_c_3 | Rep_3501_c_3_60 | 63099 | 64307 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_3501_c_3 | Rep_3501_c_3_61 | 64321 | 66216 | - | GH13_9 |
Gene ID: Rep_3501_c_3_47
Type: CAZyme
Location: 48274 - 49875 (+)
Type: CAZyme
Location: 48274 - 49875 (+)
Gene ID: Rep_3501_c_3_48
Type:
Location: 49974 - 50291 (+)
Type:
Location: 49974 - 50291 (+)
Gene ID: Rep_3501_c_3_49
Type: pfam
Location: 50387 - 50869 (-)
Type: pfam
Location: 50387 - 50869 (-)
Gene ID: Rep_3501_c_3_50
Type: TC
Location: 51017 - 52633 (-)
Type: TC
Location: 51017 - 52633 (-)
Gene ID: Rep_3501_c_3_51
Type: STP
Location: 52714 - 52977 (-)
Type: STP
Location: 52714 - 52977 (-)
Gene ID: Rep_3501_c_3_52
Type: TC
Location: 52994 - 54925 (-)
Type: TC
Location: 52994 - 54925 (-)
Gene ID: Rep_3501_c_3_53
Type: STP
Location: 54955 - 55875 (-)
Type: STP
Location: 54955 - 55875 (-)
Gene ID: Rep_3501_c_3_54
Type: TF
Location: 55875 - 56621 (-)
Type: TF
Location: 55875 - 56621 (-)
Gene ID: Rep_3501_c_3_55
Type: CAZyme
Location: 56901 - 58874 (-)
Type: CAZyme
Location: 56901 - 58874 (-)
Gene ID: Rep_3501_c_3_56
Type: TC
Location: 59029 - 59964 (+)
Type: TC
Location: 59029 - 59964 (+)
Gene ID: Rep_3501_c_3_57
Type: pfam
Location: 60006 - 60500 (+)
Type: pfam
Location: 60006 - 60500 (+)
Gene ID: Rep_3501_c_3_58
Type: CAZyme
Location: 60547 - 61965 (-)
Type: CAZyme
Location: 60547 - 61965 (-)
Gene ID: Rep_3501_c_3_59
Type: pfam
Location: 61976 - 63094 (-)
Type: pfam
Location: 61976 - 63094 (-)
Gene ID: Rep_3501_c_3_60
Type: pfam
Location: 63099 - 64307 (-)
Type: pfam
Location: 63099 - 64307 (-)
Gene ID: Rep_3501_c_3_61
Type: CAZyme
Location: 64321 - 66216 (-)
Type: CAZyme
Location: 64321 - 66216 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp017886765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.