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Cluster: Rep_3501_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3501_c_45 Rep_3501_c_45_44 45228 47465 - GH97
CAZyme Rep_3501_c_45 Rep_3501_c_45_45 47849 50533 - GH95
STP Rep_3501_c_45 Rep_3501_c_45_46 50634 51299 + AraC_binding
TC Rep_3501_c_45 Rep_3501_c_45_47 51582 52847 + 3.D.6.1.2
TC Rep_3501_c_45 Rep_3501_c_45_48 52866 53816 + 3.D.6.1.2
TC Rep_3501_c_45 Rep_3501_c_45_49 53809 54897 + 3.D.6.1.2
TC Rep_3501_c_45 Rep_3501_c_45_50 54903 55574 + 3.D.6.1.2
TC Rep_3501_c_45 Rep_3501_c_45_51 55574 56152 + 3.D.6.1.2
TC Rep_3501_c_45 Rep_3501_c_45_52 56169 56969 + 3.D.6.1.3
Gene ID: Rep_3501_c_45_44
Type: CAZyme
Location: 45228 - 47465 (-)
Gene ID: Rep_3501_c_45_45
Type: CAZyme
Location: 47849 - 50533 (-)
Gene ID: Rep_3501_c_45_46
Type: STP
Location: 50634 - 51299 (+)
Gene ID: Rep_3501_c_45_47
Type: TC
Location: 51582 - 52847 (+)
Gene ID: Rep_3501_c_45_48
Type: TC
Location: 52866 - 53816 (+)
Gene ID: Rep_3501_c_45_49
Type: TC
Location: 53809 - 54897 (+)
Gene ID: Rep_3501_c_45_50
Type: TC
Location: 54903 - 55574 (+)
Gene ID: Rep_3501_c_45_51
Type: TC
Location: 55574 - 56152 (+)
Gene ID: Rep_3501_c_45_52
Type: TC
Location: 56169 - 56969 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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