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Cluster: Rep_3501_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3501_c_14 Rep_3501_c_14_34 46592 47533 + GH43_22
CAZyme Rep_3501_c_14 Rep_3501_c_14_35 47536 48564 + GH18
NULL(UNKNOWN) Rep_3501_c_14 Rep_3501_c_14_36 48593 48910 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3501_c_14 Rep_3501_c_14_37 49116 50057 + 3.A.1.5.43
TC Rep_3501_c_14 Rep_3501_c_14_38 50050 50880 + 3.A.1.5.3
TC Rep_3501_c_14 Rep_3501_c_14_39 50897 52450 + 3.A.1.5.20
TC Rep_3501_c_14 Rep_3501_c_14_40 52457 53347 + 3.A.1.5.2
TC Rep_3501_c_14 Rep_3501_c_14_41 53340 54104 + 3.A.1.5.32
Gene ID: Rep_3501_c_14_34
Type: CAZyme
Location: 46592 - 47533 (+)
Gene ID: Rep_3501_c_14_35
Type: CAZyme
Location: 47536 - 48564 (+)
Gene ID: Rep_3501_c_14_36
Type:
Location: 48593 - 48910 (+)
Gene ID: Rep_3501_c_14_37
Type: TC
Location: 49116 - 50057 (+)
Gene ID: Rep_3501_c_14_38
Type: TC
Location: 50050 - 50880 (+)
Gene ID: Rep_3501_c_14_39
Type: TC
Location: 50897 - 52450 (+)
Gene ID: Rep_3501_c_14_40
Type: TC
Location: 52457 - 53347 (+)
Gene ID: Rep_3501_c_14_41
Type: TC
Location: 53340 - 54104 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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