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Cluster: Rep_3501_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3501_c_1 Rep_3501_c_1_3 3200 5083 + 9.B.18.2.1
TC Rep_3501_c_1 Rep_3501_c_1_4 5114 6514 + 2.A.38.4.1
TC Rep_3501_c_1 Rep_3501_c_1_5 6621 7262 + 2.A.38.4.5
pfam Rep_3501_c_1 Rep_3501_c_1_6 7278 8051 + KduI
STP Rep_3501_c_1 Rep_3501_c_1_7 8211 9080 + SBP_bac_3
TC Rep_3501_c_1 Rep_3501_c_1_8 9181 9891 + 3.A.1.3.20
TC Rep_3501_c_1 Rep_3501_c_1_9 9875 10597 + 3.A.1.3.25
CAZyme Rep_3501_c_1 Rep_3501_c_1_10 10698 12026 - CE4
TC Rep_3501_c_1 Rep_3501_c_1_11 12322 14232 + 3.D.1.4.2
TC Rep_3501_c_1 Rep_3501_c_1_12 14232 15119 + 3.D.1.4.2
TC Rep_3501_c_1 Rep_3501_c_1_13 15122 15556 + 3.D.1.4.2
pfam Rep_3501_c_1 Rep_3501_c_1_14 15557 15949 + Complex1_30kDa
TC Rep_3501_c_1 Rep_3501_c_1_15 15949 17028 + 3.D.1.4.2
TC Rep_3501_c_1 Rep_3501_c_1_16 17042 17623 + 3.D.1.4.2
Gene ID: Rep_3501_c_1_3
Type: TC
Location: 3200 - 5083 (+)
Gene ID: Rep_3501_c_1_4
Type: TC
Location: 5114 - 6514 (+)
Gene ID: Rep_3501_c_1_5
Type: TC
Location: 6621 - 7262 (+)
Gene ID: Rep_3501_c_1_6
Type: pfam
Location: 7278 - 8051 (+)
Gene ID: Rep_3501_c_1_7
Type: STP
Location: 8211 - 9080 (+)
Gene ID: Rep_3501_c_1_8
Type: TC
Location: 9181 - 9891 (+)
Gene ID: Rep_3501_c_1_9
Type: TC
Location: 9875 - 10597 (+)
Gene ID: Rep_3501_c_1_10
Type: CAZyme
Location: 10698 - 12026 (-)
Gene ID: Rep_3501_c_1_11
Type: TC
Location: 12322 - 14232 (+)
Gene ID: Rep_3501_c_1_12
Type: TC
Location: 14232 - 15119 (+)
Gene ID: Rep_3501_c_1_13
Type: TC
Location: 15122 - 15556 (+)
Gene ID: Rep_3501_c_1_14
Type: pfam
Location: 15557 - 15949 (+)
Gene ID: Rep_3501_c_1_15
Type: TC
Location: 15949 - 17028 (+)
Gene ID: Rep_3501_c_1_16
Type: TC
Location: 17042 - 17623 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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