Cluster: Rep_3495_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3495
- CGC Family ID: CGCFAM_11284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3495_c_90 | Rep_3495_c_90_22 | 20865 | 23075 | + | GH36 |
| CAZyme | Rep_3495_c_90 | Rep_3495_c_90_23 | 23191 | 25482 | + | GH74 | GH74 |
| pfam | Rep_3495_c_90 | Rep_3495_c_90_24 | 25599 | 26366 | + | Radical_SAM | Fer4_12 |
| TC | Rep_3495_c_90 | Rep_3495_c_90_25 | 27148 | 28674 | + | 2.A.21.2.4 |
| TF | Rep_3495_c_90 | Rep_3495_c_90_26 | 28963 | 29415 | + | MarR |
| TC | Rep_3495_c_90 | Rep_3495_c_90_27 | 29408 | 32419 | + | 3.A.1.122.14 |
Gene ID: Rep_3495_c_90_22
Type: CAZyme
Location: 20865 - 23075 (+)
Type: CAZyme
Location: 20865 - 23075 (+)
Gene ID: Rep_3495_c_90_23
Type: CAZyme
Location: 23191 - 25482 (+)
Type: CAZyme
Location: 23191 - 25482 (+)
Gene ID: Rep_3495_c_90_24
Type: pfam
Location: 25599 - 26366 (+)
Type: pfam
Location: 25599 - 26366 (+)
Gene ID: Rep_3495_c_90_25
Type: TC
Location: 27148 - 28674 (+)
Type: TC
Location: 27148 - 28674 (+)
Gene ID: Rep_3495_c_90_26
Type: TF
Location: 28963 - 29415 (+)
Type: TF
Location: 28963 - 29415 (+)
Gene ID: Rep_3495_c_90_27
Type: TC
Location: 29408 - 32419 (+)
Type: TC
Location: 29408 - 32419 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.