Cluster: Rep_3495_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3495
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3495_c_3 | Rep_3495_c_3_16 | 15596 | 16252 | + | 3.A.1.124.6 |
| pfam | Rep_3495_c_3 | Rep_3495_c_3_17 | 16233 | 17171 | + | ABC2_membrane_2 |
| pfam | Rep_3495_c_3 | Rep_3495_c_3_18 | 17227 | 19722 | - | LRR_5 | LRR_5 |
| CAZyme | Rep_3495_c_3 | Rep_3495_c_3_19 | 19964 | 21310 | - | GH43_35 |
Gene ID: Rep_3495_c_3_16
Type: TC
Location: 15596 - 16252 (+)
Type: TC
Location: 15596 - 16252 (+)
Gene ID: Rep_3495_c_3_17
Type: pfam
Location: 16233 - 17171 (+)
Type: pfam
Location: 16233 - 17171 (+)
Gene ID: Rep_3495_c_3_18
Type: pfam
Location: 17227 - 19722 (-)
Type: pfam
Location: 17227 - 19722 (-)
Gene ID: Rep_3495_c_3_19
Type: CAZyme
Location: 19964 - 21310 (-)
Type: CAZyme
Location: 19964 - 21310 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.