Cluster: Rep_3494_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3494
- CGC Family ID: CGCFAM_03346
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3494_c_9 | Rep_3494_c_9_21 | 23983 | 25248 | - | GH27 |
| pfam | Rep_3494_c_9 | Rep_3494_c_9_22 | 25489 | 26937 | + | SBP_bac_8 |
| TC | Rep_3494_c_9 | Rep_3494_c_9_23 | 27113 | 27976 | + | 2.A.119.2.1 |
| TF | Rep_3494_c_9 | Rep_3494_c_9_24 | 28179 | 28967 | + | HTH_AraC |
| CAZyme | Rep_3494_c_9 | Rep_3494_c_9_25 | 29064 | 30602 | - | GH13_44 |
Gene ID: Rep_3494_c_9_21
Type: CAZyme
Location: 23983 - 25248 (-)
Type: CAZyme
Location: 23983 - 25248 (-)
Gene ID: Rep_3494_c_9_22
Type: pfam
Location: 25489 - 26937 (+)
Type: pfam
Location: 25489 - 26937 (+)
Gene ID: Rep_3494_c_9_23
Type: TC
Location: 27113 - 27976 (+)
Type: TC
Location: 27113 - 27976 (+)
Gene ID: Rep_3494_c_9_24
Type: TF
Location: 28179 - 28967 (+)
Type: TF
Location: 28179 - 28967 (+)
Gene ID: Rep_3494_c_9_25
Type: CAZyme
Location: 29064 - 30602 (-)
Type: CAZyme
Location: 29064 - 30602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.