Cluster: Rep_3494_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3494
- CGC Family ID: CGCFAM_11284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3494_c_89 | Rep_3494_c_89_7 | 5434 | 7644 | + | GH36 |
| CAZyme | Rep_3494_c_89 | Rep_3494_c_89_8 | 7765 | 10059 | + | GH74 | GH74 |
| pfam | Rep_3494_c_89 | Rep_3494_c_89_9 | 10181 | 10939 | + | Radical_SAM | Fer4_12 |
| TC | Rep_3494_c_89 | Rep_3494_c_89_10 | 11001 | 11771 | + | 2.A.21.2.4 |
| TC | Rep_3494_c_89 | Rep_3494_c_89_11 | 11805 | 12527 | + | 2.A.21.2.4 |
| TF | Rep_3494_c_89 | Rep_3494_c_89_12 | 12746 | 13270 | + | MarR |
| TC | Rep_3494_c_89 | Rep_3494_c_89_13 | 13263 | 16274 | + | 3.A.1.122.2 |
Gene ID: Rep_3494_c_89_7
Type: CAZyme
Location: 5434 - 7644 (+)
Type: CAZyme
Location: 5434 - 7644 (+)
Gene ID: Rep_3494_c_89_8
Type: CAZyme
Location: 7765 - 10059 (+)
Type: CAZyme
Location: 7765 - 10059 (+)
Gene ID: Rep_3494_c_89_9
Type: pfam
Location: 10181 - 10939 (+)
Type: pfam
Location: 10181 - 10939 (+)
Gene ID: Rep_3494_c_89_10
Type: TC
Location: 11001 - 11771 (+)
Type: TC
Location: 11001 - 11771 (+)
Gene ID: Rep_3494_c_89_11
Type: TC
Location: 11805 - 12527 (+)
Type: TC
Location: 11805 - 12527 (+)
Gene ID: Rep_3494_c_89_12
Type: TF
Location: 12746 - 13270 (+)
Type: TF
Location: 12746 - 13270 (+)
Gene ID: Rep_3494_c_89_13
Type: TC
Location: 13263 - 16274 (+)
Type: TC
Location: 13263 - 16274 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.