Cluster: Rep_3494_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3494
- CGC Family ID: CGCFAM_02629
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3494_c_85 | Rep_3494_c_85_11 | 10351 | 11088 | - | 8.A.3.2.2 |
| pfam | Rep_3494_c_85 | Rep_3494_c_85_12 | 11537 | 11995 | + | DUF4830 |
| pfam | Rep_3494_c_85 | Rep_3494_c_85_13 | 12012 | 12761 | + | PseudoU_synth_2 | S4 |
| TC | Rep_3494_c_85 | Rep_3494_c_85_14 | 12978 | 14120 | + | 3.A.1.1.24 |
| NULL(UNKNOWN) | Rep_3494_c_85 | Rep_3494_c_85_15 | 14193 | 15275 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3494_c_85 | Rep_3494_c_85_16 | 15272 | 16516 | + | CE17 |
Gene ID: Rep_3494_c_85_11
Type: TC
Location: 10351 - 11088 (-)
Type: TC
Location: 10351 - 11088 (-)
Gene ID: Rep_3494_c_85_12
Type: pfam
Location: 11537 - 11995 (+)
Type: pfam
Location: 11537 - 11995 (+)
Gene ID: Rep_3494_c_85_13
Type: pfam
Location: 12012 - 12761 (+)
Type: pfam
Location: 12012 - 12761 (+)
Gene ID: Rep_3494_c_85_14
Type: TC
Location: 12978 - 14120 (+)
Type: TC
Location: 12978 - 14120 (+)
Gene ID: Rep_3494_c_85_15
Type:
Location: 14193 - 15275 (+)
Type:
Location: 14193 - 15275 (+)
Gene ID: Rep_3494_c_85_16
Type: CAZyme
Location: 15272 - 16516 (+)
Type: CAZyme
Location: 15272 - 16516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.