Cluster: Rep_3494_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3494
- CGC Family ID: CGCFAM_11280
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3494_c_68 | Rep_3494_c_68_182 | 171208 | 171879 | + | 3.A.1.122.14 |
| CAZyme | Rep_3494_c_68 | Rep_3494_c_68_183 | 172122 | 174539 | - | CBM35 | GH26 |
| TF | Rep_3494_c_68 | Rep_3494_c_68_184 | 174916 | 175425 | + | GerE |
| NULL(UNKNOWN) | Rep_3494_c_68 | Rep_3494_c_68_185 | 175412 | 177265 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3494_c_68 | Rep_3494_c_68_186 | 177471 | 178100 | + | 1.A.16.5.2 |
Gene ID: Rep_3494_c_68_182
Type: TC
Location: 171208 - 171879 (+)
Type: TC
Location: 171208 - 171879 (+)
Gene ID: Rep_3494_c_68_183
Type: CAZyme
Location: 172122 - 174539 (-)
Type: CAZyme
Location: 172122 - 174539 (-)
Gene ID: Rep_3494_c_68_184
Type: TF
Location: 174916 - 175425 (+)
Type: TF
Location: 174916 - 175425 (+)
Gene ID: Rep_3494_c_68_185
Type:
Location: 175412 - 177265 (+)
Type:
Location: 175412 - 177265 (+)
Gene ID: Rep_3494_c_68_186
Type: TC
Location: 177471 - 178100 (+)
Type: TC
Location: 177471 - 178100 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
YE71
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.