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Cluster: Rep_3487_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3487_c_22 Rep_3487_c_22_19 23536 25302 + 3.A.2.3.1
TC Rep_3487_c_22 Rep_3487_c_22_20 25315 26709 + 3.A.2.3.3
TC Rep_3487_c_22 Rep_3487_c_22_21 26745 27368 + 3.A.2.3.2
pfam Rep_3487_c_22 Rep_3487_c_22_22 27584 29770 + LytR_cpsA_psr
STP Rep_3487_c_22 Rep_3487_c_22_23 29863 31479 - CbiA
TC Rep_3487_c_22 Rep_3487_c_22_24 32102 32986 + 3.A.1.103.4
TC Rep_3487_c_22 Rep_3487_c_22_25 32999 33850 + 3.A.1.103.1
pfam Rep_3487_c_22 Rep_3487_c_22_26 33937 34326 - 4HBT | FlK
NULL(UNKNOWN) Rep_3487_c_22 Rep_3487_c_22_27 34465 35370 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3487_c_22 Rep_3487_c_22_28 35540 36751 - GH5_4
Gene ID: Rep_3487_c_22_19
Type: TC
Location: 23536 - 25302 (+)
Gene ID: Rep_3487_c_22_20
Type: TC
Location: 25315 - 26709 (+)
Gene ID: Rep_3487_c_22_21
Type: TC
Location: 26745 - 27368 (+)
Gene ID: Rep_3487_c_22_22
Type: pfam
Location: 27584 - 29770 (+)
Gene ID: Rep_3487_c_22_23
Type: STP
Location: 29863 - 31479 (-)
Gene ID: Rep_3487_c_22_24
Type: TC
Location: 32102 - 32986 (+)
Gene ID: Rep_3487_c_22_25
Type: TC
Location: 32999 - 33850 (+)
Gene ID: Rep_3487_c_22_26
Type: pfam
Location: 33937 - 34326 (-)
Gene ID: Rep_3487_c_22_27
Type:
Location: 34465 - 35370 (+)
Gene ID: Rep_3487_c_22_28
Type: CAZyme
Location: 35540 - 36751 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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