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Cluster: Rep_3481_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3481_c_17 Rep_3481_c_17_4 2335 3102 - 3.A.1.122.2
pfam Rep_3481_c_17 Rep_3481_c_17_5 3118 5484 - FtsX | FtsX
TC Rep_3481_c_17 Rep_3481_c_17_6 6301 7254 + 3.A.1.105.9
pfam Rep_3481_c_17 Rep_3481_c_17_7 7254 8384 + ABC2_membrane_3
pfam Rep_3481_c_17 Rep_3481_c_17_8 8371 9528 + ABC2_membrane_3
CAZyme Rep_3481_c_17 Rep_3481_c_17_9 9664 11250 - CBM6
pfam Rep_3481_c_17 Rep_3481_c_17_10 11267 11563 - DUF1565
TC Rep_3481_c_17 Rep_3481_c_17_11 12040 12687 - 8.A.5.1.4
Gene ID: Rep_3481_c_17_4
Type: TC
Location: 2335 - 3102 (-)
Gene ID: Rep_3481_c_17_5
Type: pfam
Location: 3118 - 5484 (-)
Gene ID: Rep_3481_c_17_6
Type: TC
Location: 6301 - 7254 (+)
Gene ID: Rep_3481_c_17_7
Type: pfam
Location: 7254 - 8384 (+)
Gene ID: Rep_3481_c_17_8
Type: pfam
Location: 8371 - 9528 (+)
Gene ID: Rep_3481_c_17_9
Type: CAZyme
Location: 9664 - 11250 (-)
Gene ID: Rep_3481_c_17_10
Type: pfam
Location: 11267 - 11563 (-)
Gene ID: Rep_3481_c_17_11
Type: TC
Location: 12040 - 12687 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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