Cluster: Rep_3481_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3481
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3481_c_12 | Rep_3481_c_12_3 | 1512 | 2879 | + | 2.A.66.1.33 |
| NULL(UNKNOWN) | Rep_3481_c_12 | Rep_3481_c_12_4 | 2929 | 3597 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3481_c_12 | Rep_3481_c_12_5 | 3721 | 4476 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3481_c_12 | Rep_3481_c_12_6 | 4889 | 5722 | - | 3.A.1.15.15 |
| TC | Rep_3481_c_12 | Rep_3481_c_12_7 | 5726 | 6430 | - | 3.A.1.15.12 |
| TC | Rep_3481_c_12 | Rep_3481_c_12_8 | 6427 | 7419 | - | 3.A.1.15.11 |
| TF | Rep_3481_c_12 | Rep_3481_c_12_9 | 7416 | 7835 | - | FUR |
| STP | Rep_3481_c_12 | Rep_3481_c_12_10 | 7957 | 9222 | - | SBP_bac_1 |
| TC | Rep_3481_c_12 | Rep_3481_c_12_11 | 9219 | 10706 | - | 9.B.34.1.2 |
| TC | Rep_3481_c_12 | Rep_3481_c_12_12 | 10887 | 15506 | - | 2.A.21.9.1 |
| pfam | Rep_3481_c_12 | Rep_3481_c_12_13 | 15719 | 16810 | + | Chorismate_synt |
| pfam | Rep_3481_c_12 | Rep_3481_c_12_14 | 16995 | 18023 | + | DAHP_synth_1 |
| CAZyme | Rep_3481_c_12 | Rep_3481_c_12_15 | 18191 | 19645 | + | GT5 |
Gene ID: Rep_3481_c_12_3
Type: TC
Location: 1512 - 2879 (+)
Type: TC
Location: 1512 - 2879 (+)
Gene ID: Rep_3481_c_12_4
Type:
Location: 2929 - 3597 (-)
Type:
Location: 2929 - 3597 (-)
Gene ID: Rep_3481_c_12_5
Type:
Location: 3721 - 4476 (-)
Type:
Location: 3721 - 4476 (-)
Gene ID: Rep_3481_c_12_6
Type: TC
Location: 4889 - 5722 (-)
Type: TC
Location: 4889 - 5722 (-)
Gene ID: Rep_3481_c_12_7
Type: TC
Location: 5726 - 6430 (-)
Type: TC
Location: 5726 - 6430 (-)
Gene ID: Rep_3481_c_12_8
Type: TC
Location: 6427 - 7419 (-)
Type: TC
Location: 6427 - 7419 (-)
Gene ID: Rep_3481_c_12_9
Type: TF
Location: 7416 - 7835 (-)
Type: TF
Location: 7416 - 7835 (-)
Gene ID: Rep_3481_c_12_10
Type: STP
Location: 7957 - 9222 (-)
Type: STP
Location: 7957 - 9222 (-)
Gene ID: Rep_3481_c_12_11
Type: TC
Location: 9219 - 10706 (-)
Type: TC
Location: 9219 - 10706 (-)
Gene ID: Rep_3481_c_12_12
Type: TC
Location: 10887 - 15506 (-)
Type: TC
Location: 10887 - 15506 (-)
Gene ID: Rep_3481_c_12_13
Type: pfam
Location: 15719 - 16810 (+)
Type: pfam
Location: 15719 - 16810 (+)
Gene ID: Rep_3481_c_12_14
Type: pfam
Location: 16995 - 18023 (+)
Type: pfam
Location: 16995 - 18023 (+)
Gene ID: Rep_3481_c_12_15
Type: CAZyme
Location: 18191 - 19645 (+)
Type: CAZyme
Location: 18191 - 19645 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp900545125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.