Cluster: Rep_3481_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3481
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3481_c_52 | Rep_3481_c_52_1 | 3 | 2501 | + | 4.C.1.1.7 |
| CAZyme | Rep_3481_c_52 | Rep_3481_c_52_2 | 2706 | 3737 | + | GH5_37 |
| pfam | Rep_3481_c_52 | Rep_3481_c_52_3 | 3833 | 4510 | + | PNP_UDP_1 |
| pfam | Rep_3481_c_52 | Rep_3481_c_52_4 | 4524 | 5432 | + | Dockerin_1 |
| TC | Rep_3481_c_52 | Rep_3481_c_52_5 | 5530 | 6351 | + | 3.A.1.132.3 |
| CAZyme | Rep_3481_c_52 | Rep_3481_c_52_6 | 6403 | 9147 | - | CBM3 | GH9 |
Gene ID: Rep_3481_c_52_1
Type: TC
Location: 3 - 2501 (+)
Type: TC
Location: 3 - 2501 (+)
Gene ID: Rep_3481_c_52_2
Type: CAZyme
Location: 2706 - 3737 (+)
Type: CAZyme
Location: 2706 - 3737 (+)
Gene ID: Rep_3481_c_52_3
Type: pfam
Location: 3833 - 4510 (+)
Type: pfam
Location: 3833 - 4510 (+)
Gene ID: Rep_3481_c_52_4
Type: pfam
Location: 4524 - 5432 (+)
Type: pfam
Location: 4524 - 5432 (+)
Gene ID: Rep_3481_c_52_5
Type: TC
Location: 5530 - 6351 (+)
Type: TC
Location: 5530 - 6351 (+)
Gene ID: Rep_3481_c_52_6
Type: CAZyme
Location: 6403 - 9147 (-)
Type: CAZyme
Location: 6403 - 9147 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp900545125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.