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Cluster: Rep_3477_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3477_c_0 Rep_3477_c_0_2937 3031807 3032733 + 8.A.21.2.3
pfam Rep_3477_c_0 Rep_3477_c_0_2938 3032979 3034181 + PGA_cap
CAZyme Rep_3477_c_0 Rep_3477_c_0_2939 3034263 3036536 - GH36
NULL(UNKNOWN) Rep_3477_c_0 Rep_3477_c_0_2940 3036604 3037170 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3477_c_0 Rep_3477_c_0_2941 3037160 3038119 - 9.B.157.1.3
TC Rep_3477_c_0 Rep_3477_c_0_2942 3038158 3039189 - 9.B.157.1.2
TC Rep_3477_c_0 Rep_3477_c_0_2943 3039634 3040809 + 2.A.4.7.4
Gene ID: Rep_3477_c_0_2937
Type: TC
Location: 3031807 - 3032733 (+)
Gene ID: Rep_3477_c_0_2938
Type: pfam
Location: 3032979 - 3034181 (+)
Gene ID: Rep_3477_c_0_2939
Type: CAZyme
Location: 3034263 - 3036536 (-)
Gene ID: Rep_3477_c_0_2940
Type:
Location: 3036604 - 3037170 (-)
Gene ID: Rep_3477_c_0_2941
Type: TC
Location: 3037160 - 3038119 (-)
Gene ID: Rep_3477_c_0_2942
Type: TC
Location: 3038158 - 3039189 (-)
Gene ID: Rep_3477_c_0_2943
Type: TC
Location: 3039634 - 3040809 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3477_c_0_2942 vegan > omnivore 1.52666 0.04758

🧭 Explore Read Mapping of CGC

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