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Cluster: Rep_3477_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3477_c_0 Rep_3477_c_0_356 384783 386120 - 2.A.66.1.32
pfam Rep_3477_c_0 Rep_3477_c_0_357 386300 387277 - DDE_Tnp_1 | DUF772 | DDE_Tnp_1_3 | DDE_Tnp_1_6
STP Rep_3477_c_0 Rep_3477_c_0_358 387332 389227 - GGDEF | Peripla_BP_3
CAZyme Rep_3477_c_0 Rep_3477_c_0_359 389579 390793 - CBM13 | GH16_21
CAZyme Rep_3477_c_0 Rep_3477_c_0_360 391185 391979 - GH16_21
TF Rep_3477_c_0 Rep_3477_c_0_361 392064 392828 - HTH_AraC | HTH_AraC
STP Rep_3477_c_0 Rep_3477_c_0_362 392982 394400 + SBP_bac_1
CAZyme Rep_3477_c_0 Rep_3477_c_0_363 394471 395427 + GH5_37
Gene ID: Rep_3477_c_0_356
Type: TC
Location: 384783 - 386120 (-)
Gene ID: Rep_3477_c_0_357
Type: pfam
Location: 386300 - 387277 (-)
Gene ID: Rep_3477_c_0_358
Type: STP
Location: 387332 - 389227 (-)
Gene ID: Rep_3477_c_0_359
Type: CAZyme
Location: 389579 - 390793 (-)
Gene ID: Rep_3477_c_0_360
Type: CAZyme
Location: 391185 - 391979 (-)
Gene ID: Rep_3477_c_0_361
Type: TF
Location: 392064 - 392828 (-)
Gene ID: Rep_3477_c_0_362
Type: STP
Location: 392982 - 394400 (+)
Gene ID: Rep_3477_c_0_363
Type: CAZyme
Location: 394471 - 395427 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3477_c_0_358 vegetarian > omnivore 2.29414 0.03635

🧭 Explore Read Mapping of CGC

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