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Cluster: Rep_3477_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3477_c_0 Rep_3477_c_0_2391 2514643 2515659 - 9.A.11.1.1
TC Rep_3477_c_0 Rep_3477_c_0_2392 2515846 2517285 + 2.A.25.1.4
NULL(UNKNOWN) Rep_3477_c_0 Rep_3477_c_0_2393 2517328 2518038 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3477_c_0 Rep_3477_c_0_2394 2518880 2520517 - GH5_4
pfam Rep_3477_c_0 Rep_3477_c_0_2395 2520568 2520897 - DUF4234 | DUF4234
CAZyme Rep_3477_c_0 Rep_3477_c_0_2396 2521076 2523427 - GH31_3
Gene ID: Rep_3477_c_0_2391
Type: TC
Location: 2514643 - 2515659 (-)
Gene ID: Rep_3477_c_0_2392
Type: TC
Location: 2515846 - 2517285 (+)
Gene ID: Rep_3477_c_0_2393
Type:
Location: 2517328 - 2518038 (+)
Gene ID: Rep_3477_c_0_2394
Type: CAZyme
Location: 2518880 - 2520517 (-)
Gene ID: Rep_3477_c_0_2395
Type: pfam
Location: 2520568 - 2520897 (-)
Gene ID: Rep_3477_c_0_2396
Type: CAZyme
Location: 2521076 - 2523427 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3477_c_0_2392 vegetarian > omnivore 1.07629 0.03635

🧭 Explore Read Mapping of CGC

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