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Cluster: Rep_3477_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3477_c_0 Rep_3477_c_0_2355 2471821 2474817 + GH2
pfam Rep_3477_c_0 Rep_3477_c_0_2356 2475317 2475655 + Glyco_hydro_3
TF Rep_3477_c_0 Rep_3477_c_0_2357 2475975 2476799 + HTH_AraC | HTH_AraC
CAZyme Rep_3477_c_0 Rep_3477_c_0_2358 2476965 2479661 + GH59
TC Rep_3477_c_0 Rep_3477_c_0_2359 2479681 2481009 + 2.A.66.1.33
pfam Rep_3477_c_0 Rep_3477_c_0_2360 2480960 2481172 - DUF3737
CAZyme Rep_3477_c_0 Rep_3477_c_0_2361 2481599 2483062 + GH5_4
Gene ID: Rep_3477_c_0_2355
Type: CAZyme
Location: 2471821 - 2474817 (+)
Gene ID: Rep_3477_c_0_2356
Type: pfam
Location: 2475317 - 2475655 (+)
Gene ID: Rep_3477_c_0_2357
Type: TF
Location: 2475975 - 2476799 (+)
Gene ID: Rep_3477_c_0_2358
Type: CAZyme
Location: 2476965 - 2479661 (+)
Gene ID: Rep_3477_c_0_2359
Type: TC
Location: 2479681 - 2481009 (+)
Gene ID: Rep_3477_c_0_2360
Type: pfam
Location: 2480960 - 2481172 (-)
Gene ID: Rep_3477_c_0_2361
Type: CAZyme
Location: 2481599 - 2483062 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3477_c_0_2360 vegan > omnivore 1.54865 0.04332

🧭 Explore Read Mapping of CGC

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