dbCAN HGM

Cluster: Rep_3477_CGC18

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 27
CAZyme Count: 4
Substrate:
Genome ID: Rep_3477
Continent: NA
Source Study: Leviatan et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_3477_c_0	Rep_3477_c_0_1615	1728935	1730614	-	1.A.11.2.7
TC	Rep_3477_c_0	Rep_3477_c_0_1616	1730696	1732378	-	3.A.1.5.27
TC	Rep_3477_c_0	Rep_3477_c_0_1617	1732580	1733569	-	3.A.1.5.35
TC	Rep_3477_c_0	Rep_3477_c_0_1618	1733573	1734574	-	3.A.1.5.37
TC	Rep_3477_c_0	Rep_3477_c_0_1619	1734595	1735530	-	3.A.1.5.39
TC	Rep_3477_c_0	Rep_3477_c_0_1620	1735552	1736496	-	3.A.1.5.11
TF	Rep_3477_c_0	Rep_3477_c_0_1621	1736932	1737603	+	Trans_reg_C
STP	Rep_3477_c_0	Rep_3477_c_0_1622	1737608	1738588	+	HATPase_c
TC	Rep_3477_c_0	Rep_3477_c_0_1623	1738688	1739449	+	3.A.1.134.4
TC	Rep_3477_c_0	Rep_3477_c_0_1624	1739449	1741470	+	3.A.1.134.4
NULL(UNKNOWN)	Rep_3477_c_0	Rep_3477_c_0_1625	1741475	1741645	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	Rep_3477_c_0	Rep_3477_c_0_1626	1741629	1742345	+	GT51
TC	Rep_3477_c_0	Rep_3477_c_0_1627	1742545	1743498	+	3.A.1.11.8
TC	Rep_3477_c_0	Rep_3477_c_0_1628	1743510	1744622	+	3.A.1.20.1
TC	Rep_3477_c_0	Rep_3477_c_0_1629	1744633	1746291	+	3.A.1.20.1
pfam	Rep_3477_c_0	Rep_3477_c_0_1630	1746293	1747333	+	Lactamase_B
TC	Rep_3477_c_0	Rep_3477_c_0_1631	1747408	1748283	-	8.A.7.1.1
pfam	Rep_3477_c_0	Rep_3477_c_0_1632	1748300	1748893	+	Transposase_mut
TC	Rep_3477_c_0	Rep_3477_c_0_1633	1749651	1751105	-	2.A.66.2.23
pfam	Rep_3477_c_0	Rep_3477_c_0_1634	1751124	1752308	-	Wzy_C
CAZyme	Rep_3477_c_0	Rep_3477_c_0_1635	1752292	1753401	-	GT4
STP	Rep_3477_c_0	Rep_3477_c_0_1636	1753412	1754575	-	Fer4
pfam	Rep_3477_c_0	Rep_3477_c_0_1637	1754565	1755713	-	PS_pyruv_trans
CAZyme	Rep_3477_c_0	Rep_3477_c_0_1638	1755713	1756948	-	GT4
pfam	Rep_3477_c_0	Rep_3477_c_0_1639	1756979	1758175	-	FrhB_FdhB_N \| FrhB_FdhB_C \| Fer4_7
NULL(UNKNOWN)	Rep_3477_c_0	Rep_3477_c_0_1640	1758358	1758708	-	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	Rep_3477_c_0	Rep_3477_c_0_1641	1758705	1759715	-	GT8

Gene ID: Rep_3477_c_0_1615
Type: TC
Location: 1728935 - 1730614 (-)

Gene ID: Rep_3477_c_0_1616
Type: TC
Location: 1730696 - 1732378 (-)

Gene ID: Rep_3477_c_0_1617
Type: TC
Location: 1732580 - 1733569 (-)

Gene ID: Rep_3477_c_0_1618
Type: TC
Location: 1733573 - 1734574 (-)

Gene ID: Rep_3477_c_0_1619
Type: TC
Location: 1734595 - 1735530 (-)

Gene ID: Rep_3477_c_0_1620
Type: TC
Location: 1735552 - 1736496 (-)

Gene ID: Rep_3477_c_0_1621
Type: TF
Location: 1736932 - 1737603 (+)

Gene ID: Rep_3477_c_0_1622
Type: STP
Location: 1737608 - 1738588 (+)

Gene ID: Rep_3477_c_0_1623
Type: TC
Location: 1738688 - 1739449 (+)

Gene ID: Rep_3477_c_0_1624
Type: TC
Location: 1739449 - 1741470 (+)

Gene ID: Rep_3477_c_0_1625
Type:
Location: 1741475 - 1741645 (+)

Gene ID: Rep_3477_c_0_1626
Type: CAZyme
Location: 1741629 - 1742345 (+)

Gene ID: Rep_3477_c_0_1627
Type: TC
Location: 1742545 - 1743498 (+)

Gene ID: Rep_3477_c_0_1628
Type: TC
Location: 1743510 - 1744622 (+)

Gene ID: Rep_3477_c_0_1629
Type: TC
Location: 1744633 - 1746291 (+)

Gene ID: Rep_3477_c_0_1630
Type: pfam
Location: 1746293 - 1747333 (+)

Gene ID: Rep_3477_c_0_1631
Type: TC
Location: 1747408 - 1748283 (-)

Gene ID: Rep_3477_c_0_1632
Type: pfam
Location: 1748300 - 1748893 (+)

Gene ID: Rep_3477_c_0_1633
Type: TC
Location: 1749651 - 1751105 (-)

Gene ID: Rep_3477_c_0_1634
Type: pfam
Location: 1751124 - 1752308 (-)

Gene ID: Rep_3477_c_0_1635
Type: CAZyme
Location: 1752292 - 1753401 (-)

Gene ID: Rep_3477_c_0_1636
Type: STP
Location: 1753412 - 1754575 (-)

Gene ID: Rep_3477_c_0_1637
Type: pfam
Location: 1754565 - 1755713 (-)

Gene ID: Rep_3477_c_0_1638
Type: CAZyme
Location: 1755713 - 1756948 (-)

Gene ID: Rep_3477_c_0_1639
Type: pfam
Location: 1756979 - 1758175 (-)

Gene ID: Rep_3477_c_0_1640
Type:
Location: 1758358 - 1758708 (-)

Gene ID: Rep_3477_c_0_1641
Type: CAZyme
Location: 1758705 - 1759715 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacillota_A

→

Class

Clostridia

→

Order

Oscillospirales

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Family

Ruminococcaceae

→

Genus

Huintestinicola

→

Species

Huintestinicola butyrica

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_3477_c_0_1632	vegan > omnivore	1.66987	0.04758
Rep_3477_c_0_1633	vegetarian > omnivore	1.83527	0.01743
Rep_3477_c_0_1634	vegetarian > omnivore	2.61551	0.03635
Rep_3477_c_0_1639	vegan > omnivore	2.25428	0.04332
Rep_3477_c_0_1641	vegan > omnivore	2.08431	0.04758

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_3477_c_0_1632	vegan > omnivore	1.11815	0.00331

🧭 Explore Read Mapping of CGC

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