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Cluster: Rep_3477_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3477_c_0 Rep_3477_c_0_1523 1626026 1626262 + 9.A.8.1.6
TC Rep_3477_c_0 Rep_3477_c_0_1524 1626286 1628298 + 9.A.8.1.6
pfam Rep_3477_c_0 Rep_3477_c_0_1525 1628311 1628463 + FeoB_associated
pfam Rep_3477_c_0 Rep_3477_c_0_1526 1628687 1631647 - FtsX
TC Rep_3477_c_0 Rep_3477_c_0_1527 1631662 1632360 - 3.A.1.134.3
CAZyme Rep_3477_c_0 Rep_3477_c_0_1528 1632738 1635206 - GH94
NULL(UNKNOWN) Rep_3477_c_0 Rep_3477_c_0_1529 1635475 1635645 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3477_c_0 Rep_3477_c_0_1530 1635839 1637350 + GH77
CAZyme Rep_3477_c_0 Rep_3477_c_0_1531 1637352 1638605 + CE17
Gene ID: Rep_3477_c_0_1523
Type: TC
Location: 1626026 - 1626262 (+)
Gene ID: Rep_3477_c_0_1524
Type: TC
Location: 1626286 - 1628298 (+)
Gene ID: Rep_3477_c_0_1525
Type: pfam
Location: 1628311 - 1628463 (+)
Gene ID: Rep_3477_c_0_1526
Type: pfam
Location: 1628687 - 1631647 (-)
Gene ID: Rep_3477_c_0_1527
Type: TC
Location: 1631662 - 1632360 (-)
Gene ID: Rep_3477_c_0_1528
Type: CAZyme
Location: 1632738 - 1635206 (-)
Gene ID: Rep_3477_c_0_1529
Type:
Location: 1635475 - 1635645 (-)
Gene ID: Rep_3477_c_0_1530
Type: CAZyme
Location: 1635839 - 1637350 (+)
Gene ID: Rep_3477_c_0_1531
Type: CAZyme
Location: 1637352 - 1638605 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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