Cluster: Rep_3468_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_3468
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3468_c_158 | Rep_3468_c_158_1 | 35 | 2077 | - | CBM48 | GH13_9 |
| STP | Rep_3468_c_158 | Rep_3468_c_158_2 | 2324 | 4582 | - | SpoIIE |
| pfam | Rep_3468_c_158 | Rep_3468_c_158_3 | 4783 | 5700 | - | HTS |
| TC | Rep_3468_c_158 | Rep_3468_c_158_4 | 5839 | 7728 | - | 3.A.16.1.1 |
Gene ID: Rep_3468_c_158_1
Type: CAZyme
Location: 35 - 2077 (-)
Type: CAZyme
Location: 35 - 2077 (-)
Gene ID: Rep_3468_c_158_2
Type: STP
Location: 2324 - 4582 (-)
Type: STP
Location: 2324 - 4582 (-)
Gene ID: Rep_3468_c_158_3
Type: pfam
Location: 4783 - 5700 (-)
Type: pfam
Location: 4783 - 5700 (-)
Gene ID: Rep_3468_c_158_4
Type: TC
Location: 5839 - 7728 (-)
Type: TC
Location: 5839 - 7728 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UMGS1601
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.