Cluster: Rep_3467_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3467
- CGC Family ID: CGCFAM_03515
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3467_c_1 | Rep_3467_c_1_176 | 214151 | 215632 | - | CBM91 | GH43_12 |
| STP | Rep_3467_c_1 | Rep_3467_c_1_177 | 216146 | 216358 | + | FeoA |
| STP | Rep_3467_c_1 | Rep_3467_c_1_178 | 216516 | 216734 | + | FeoA |
| TC | Rep_3467_c_1 | Rep_3467_c_1_179 | 216797 | 219226 | + | 9.A.8.1.6 |
| pfam | Rep_3467_c_1 | Rep_3467_c_1_180 | 219243 | 219416 | + | FeoB_associated |
| CAZyme | Rep_3467_c_1 | Rep_3467_c_1_181 | 219595 | 222156 | + | GH5_4 |
| TF | Rep_3467_c_1 | Rep_3467_c_1_182 | 222268 | 223023 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | Rep_3467_c_1 | Rep_3467_c_1_183 | 223464 | 223685 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3467_c_1 | Rep_3467_c_1_184 | 224019 | 225329 | - | 2.A.66.1.32 |
| NULL(UNKNOWN) | Rep_3467_c_1 | Rep_3467_c_1_185 | 225800 | 226006 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3467_c_1 | Rep_3467_c_1_186 | 226016 | 226129 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3467_c_1 | Rep_3467_c_1_187 | 227354 | 229306 | + | GH5_4 |
Gene ID: Rep_3467_c_1_176
Type: CAZyme
Location: 214151 - 215632 (-)
Type: CAZyme
Location: 214151 - 215632 (-)
Gene ID: Rep_3467_c_1_177
Type: STP
Location: 216146 - 216358 (+)
Type: STP
Location: 216146 - 216358 (+)
Gene ID: Rep_3467_c_1_178
Type: STP
Location: 216516 - 216734 (+)
Type: STP
Location: 216516 - 216734 (+)
Gene ID: Rep_3467_c_1_179
Type: TC
Location: 216797 - 219226 (+)
Type: TC
Location: 216797 - 219226 (+)
Gene ID: Rep_3467_c_1_180
Type: pfam
Location: 219243 - 219416 (+)
Type: pfam
Location: 219243 - 219416 (+)
Gene ID: Rep_3467_c_1_181
Type: CAZyme
Location: 219595 - 222156 (+)
Type: CAZyme
Location: 219595 - 222156 (+)
Gene ID: Rep_3467_c_1_182
Type: TF
Location: 222268 - 223023 (-)
Type: TF
Location: 222268 - 223023 (-)
Gene ID: Rep_3467_c_1_183
Type:
Location: 223464 - 223685 (+)
Type:
Location: 223464 - 223685 (+)
Gene ID: Rep_3467_c_1_184
Type: TC
Location: 224019 - 225329 (-)
Type: TC
Location: 224019 - 225329 (-)
Gene ID: Rep_3467_c_1_185
Type:
Location: 225800 - 226006 (+)
Type:
Location: 225800 - 226006 (+)
Gene ID: Rep_3467_c_1_186
Type:
Location: 226016 - 226129 (+)
Type:
Location: 226016 - 226129 (+)
Gene ID: Rep_3467_c_1_187
Type: CAZyme
Location: 227354 - 229306 (+)
Type: CAZyme
Location: 227354 - 229306 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UMGS1601
Species
UMGS1601 sp900553335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.