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Cluster: Rep_3467_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3467_c_8 Rep_3467_c_8_39 33895 35874 + GT4
NULL(UNKNOWN) Rep_3467_c_8 Rep_3467_c_8_40 35891 36244 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_3467_c_8 Rep_3467_c_8_41 36543 37367 + SBP_bac_1
TC Rep_3467_c_8 Rep_3467_c_8_42 37428 38294 + 3.A.1.7.5
TC Rep_3467_c_8 Rep_3467_c_8_43 38296 39144 + 3.A.1.7.2
TC Rep_3467_c_8 Rep_3467_c_8_44 39141 39899 + 3.A.1.7.5
pfam Rep_3467_c_8 Rep_3467_c_8_45 39900 40541 + PhoU | PhoU
TC Rep_3467_c_8 Rep_3467_c_8_46 40684 41550 + 2.A.7.2.1
TF Rep_3467_c_8 Rep_3467_c_8_47 41663 42340 + Trans_reg_C
STP Rep_3467_c_8 Rep_3467_c_8_48 42337 43995 + HATPase_c | HisKA
TC Rep_3467_c_8 Rep_3467_c_8_49 44135 45889 + 2.A.58.2.2
Gene ID: Rep_3467_c_8_39
Type: CAZyme
Location: 33895 - 35874 (+)
Gene ID: Rep_3467_c_8_40
Type:
Location: 35891 - 36244 (+)
Gene ID: Rep_3467_c_8_41
Type: STP
Location: 36543 - 37367 (+)
Gene ID: Rep_3467_c_8_42
Type: TC
Location: 37428 - 38294 (+)
Gene ID: Rep_3467_c_8_43
Type: TC
Location: 38296 - 39144 (+)
Gene ID: Rep_3467_c_8_44
Type: TC
Location: 39141 - 39899 (+)
Gene ID: Rep_3467_c_8_45
Type: pfam
Location: 39900 - 40541 (+)
Gene ID: Rep_3467_c_8_46
Type: TC
Location: 40684 - 41550 (+)
Gene ID: Rep_3467_c_8_47
Type: TF
Location: 41663 - 42340 (+)
Gene ID: Rep_3467_c_8_48
Type: STP
Location: 42337 - 43995 (+)
Gene ID: Rep_3467_c_8_49
Type: TC
Location: 44135 - 45889 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3467_c_8_42 vegetarian > vegan 1.73788 0.01033

🧭 Explore Read Mapping of CGC

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