Cluster: Rep_3461_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_3461
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_41 | 45410 | 46381 | - | GT2 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_42 | 46414 | 47400 | - | GT2 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_43 | 47414 | 48607 | - | GT2 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_44 | 48617 | 49729 | - | GT4 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_45 | 49747 | 50643 | - | GT2 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_46 | 50693 | 51760 | - | GT2 |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_47 | 51876 | 52853 | - | GT2 |
| pfam | Rep_3461_c_56 | Rep_3461_c_56_48 | 52899 | 53993 | - | EpsG |
| CAZyme | Rep_3461_c_56 | Rep_3461_c_56_49 | 54032 | 55168 | - | GT4 |
| pfam | Rep_3461_c_56 | Rep_3461_c_56_50 | 55192 | 56016 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 |
| TC | Rep_3461_c_56 | Rep_3461_c_56_51 | 56227 | 57180 | - | 8.A.21.2.2 |
Gene ID: Rep_3461_c_56_41
Type: CAZyme
Location: 45410 - 46381 (-)
Type: CAZyme
Location: 45410 - 46381 (-)
Gene ID: Rep_3461_c_56_42
Type: CAZyme
Location: 46414 - 47400 (-)
Type: CAZyme
Location: 46414 - 47400 (-)
Gene ID: Rep_3461_c_56_43
Type: CAZyme
Location: 47414 - 48607 (-)
Type: CAZyme
Location: 47414 - 48607 (-)
Gene ID: Rep_3461_c_56_44
Type: CAZyme
Location: 48617 - 49729 (-)
Type: CAZyme
Location: 48617 - 49729 (-)
Gene ID: Rep_3461_c_56_45
Type: CAZyme
Location: 49747 - 50643 (-)
Type: CAZyme
Location: 49747 - 50643 (-)
Gene ID: Rep_3461_c_56_46
Type: CAZyme
Location: 50693 - 51760 (-)
Type: CAZyme
Location: 50693 - 51760 (-)
Gene ID: Rep_3461_c_56_47
Type: CAZyme
Location: 51876 - 52853 (-)
Type: CAZyme
Location: 51876 - 52853 (-)
Gene ID: Rep_3461_c_56_48
Type: pfam
Location: 52899 - 53993 (-)
Type: pfam
Location: 52899 - 53993 (-)
Gene ID: Rep_3461_c_56_49
Type: CAZyme
Location: 54032 - 55168 (-)
Type: CAZyme
Location: 54032 - 55168 (-)
Gene ID: Rep_3461_c_56_50
Type: pfam
Location: 55192 - 56016 (-)
Type: pfam
Location: 55192 - 56016 (-)
Gene ID: Rep_3461_c_56_51
Type: TC
Location: 56227 - 57180 (-)
Type: TC
Location: 56227 - 57180 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
FB2012
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.