Cluster: Rep_3461_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_3461
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3461_c_4 | Rep_3461_c_4_71 | 70915 | 71598 | + | 3.A.1.122.7 |
| CAZyme | Rep_3461_c_4 | Rep_3461_c_4_72 | 71710 | 73128 | - | GT5 |
| pfam | Rep_3461_c_4 | Rep_3461_c_4_73 | 73201 | 74328 | - | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_3461_c_4 | Rep_3461_c_4_74 | 74347 | 75549 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_3461_c_4 | Rep_3461_c_4_75 | 75575 | 77620 | - | CBM48 | GH13_9 |
Gene ID: Rep_3461_c_4_71
Type: TC
Location: 70915 - 71598 (+)
Type: TC
Location: 70915 - 71598 (+)
Gene ID: Rep_3461_c_4_72
Type: CAZyme
Location: 71710 - 73128 (-)
Type: CAZyme
Location: 71710 - 73128 (-)
Gene ID: Rep_3461_c_4_73
Type: pfam
Location: 73201 - 74328 (-)
Type: pfam
Location: 73201 - 74328 (-)
Gene ID: Rep_3461_c_4_74
Type: pfam
Location: 74347 - 75549 (-)
Type: pfam
Location: 74347 - 75549 (-)
Gene ID: Rep_3461_c_4_75
Type: CAZyme
Location: 75575 - 77620 (-)
Type: CAZyme
Location: 75575 - 77620 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
FB2012
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.