Cluster: Rep_3460_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3460
- CGC Family ID: CGCFAM_03225
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3460_c_76 | Rep_3460_c_76_50 | 57421 | 60807 | - | GH2 |
| CAZyme | Rep_3460_c_76 | Rep_3460_c_76_51 | 60817 | 61785 | - | GH26 |
| pfam | Rep_3460_c_76 | Rep_3460_c_76_52 | 61909 | 62157 | - | PhdYeFM_antitox |
| TC | Rep_3460_c_76 | Rep_3460_c_76_53 | 62701 | 64608 | - | 3.A.1.135.5 |
| TC | Rep_3460_c_76 | Rep_3460_c_76_54 | 64627 | 66369 | - | 3.A.1.135.5 |
Gene ID: Rep_3460_c_76_50
Type: CAZyme
Location: 57421 - 60807 (-)
Type: CAZyme
Location: 57421 - 60807 (-)
Gene ID: Rep_3460_c_76_51
Type: CAZyme
Location: 60817 - 61785 (-)
Type: CAZyme
Location: 60817 - 61785 (-)
Gene ID: Rep_3460_c_76_52
Type: pfam
Location: 61909 - 62157 (-)
Type: pfam
Location: 61909 - 62157 (-)
Gene ID: Rep_3460_c_76_53
Type: TC
Location: 62701 - 64608 (-)
Type: TC
Location: 62701 - 64608 (-)
Gene ID: Rep_3460_c_76_54
Type: TC
Location: 64627 - 66369 (-)
Type: TC
Location: 64627 - 66369 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.