Cluster: Rep_3460_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3460
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3460_c_43 | Rep_3460_c_43_5 | 3607 | 4377 | - | 3.A.1.17.1 |
| TC | Rep_3460_c_43 | Rep_3460_c_43_6 | 4377 | 5138 | - | 3.A.1.17.1 |
| TC | Rep_3460_c_43 | Rep_3460_c_43_7 | 5153 | 6094 | - | 3.A.1.17.12 |
| CAZyme | Rep_3460_c_43 | Rep_3460_c_43_8 | 6610 | 8601 | + | CBM2 | GH5_1 |
Gene ID: Rep_3460_c_43_5
Type: TC
Location: 3607 - 4377 (-)
Type: TC
Location: 3607 - 4377 (-)
Gene ID: Rep_3460_c_43_6
Type: TC
Location: 4377 - 5138 (-)
Type: TC
Location: 4377 - 5138 (-)
Gene ID: Rep_3460_c_43_7
Type: TC
Location: 5153 - 6094 (-)
Type: TC
Location: 5153 - 6094 (-)
Gene ID: Rep_3460_c_43_8
Type: CAZyme
Location: 6610 - 8601 (+)
Type: CAZyme
Location: 6610 - 8601 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.