Cluster: Rep_3460_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3460
- CGC Family ID: CGCFAM_06982
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3460_c_132 | Rep_3460_c_132_32 | 30289 | 32790 | - | GH94 |
| TF | Rep_3460_c_132 | Rep_3460_c_132_33 | 33136 | 33990 | + | HTH_AraC | HTH_AraC |
| TC | Rep_3460_c_132 | Rep_3460_c_132_34 | 33992 | 34849 | + | 2.A.7.2.1 |
| pfam | Rep_3460_c_132 | Rep_3460_c_132_35 | 35045 | 35515 | - | tRNA_edit |
| pfam | Rep_3460_c_132 | Rep_3460_c_132_36 | 35883 | 36629 | - | MethyltransfD12 |
| CAZyme | Rep_3460_c_132 | Rep_3460_c_132_37 | 36686 | 37783 | - | GH25 |
Gene ID: Rep_3460_c_132_32
Type: CAZyme
Location: 30289 - 32790 (-)
Type: CAZyme
Location: 30289 - 32790 (-)
Gene ID: Rep_3460_c_132_33
Type: TF
Location: 33136 - 33990 (+)
Type: TF
Location: 33136 - 33990 (+)
Gene ID: Rep_3460_c_132_34
Type: TC
Location: 33992 - 34849 (+)
Type: TC
Location: 33992 - 34849 (+)
Gene ID: Rep_3460_c_132_35
Type: pfam
Location: 35045 - 35515 (-)
Type: pfam
Location: 35045 - 35515 (-)
Gene ID: Rep_3460_c_132_36
Type: pfam
Location: 35883 - 36629 (-)
Type: pfam
Location: 35883 - 36629 (-)
Gene ID: Rep_3460_c_132_37
Type: CAZyme
Location: 36686 - 37783 (-)
Type: CAZyme
Location: 36686 - 37783 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.