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Cluster: Rep_3460_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3460_c_123 Rep_3460_c_123_44 40513 41205 + 1.C.82.1.1
NULL(UNKNOWN) Rep_3460_c_123 Rep_3460_c_123_45 41418 42080 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3460_c_123 Rep_3460_c_123_46 42130 43305 - GH130_1
NULL(UNKNOWN) Rep_3460_c_123 Rep_3460_c_123_47 43445 44044 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3460_c_123 Rep_3460_c_123_48 44088 44651 - 1.A.22.1.1
pfam Rep_3460_c_123 Rep_3460_c_123_49 44675 46816 - S1 | RNB | OB_RNB
TF Rep_3460_c_123 Rep_3460_c_123_50 47470 47700 + HTH_3
TC Rep_3460_c_123 Rep_3460_c_123_51 48382 49029 + 2.A.87.1.3
pfam Rep_3460_c_123 Rep_3460_c_123_52 49109 49768 - DUF2461
TC Rep_3460_c_123 Rep_3460_c_123_53 49913 50389 + 9.A.24.1.7
Gene ID: Rep_3460_c_123_44
Type: TC
Location: 40513 - 41205 (+)
Gene ID: Rep_3460_c_123_45
Type:
Location: 41418 - 42080 (-)
Gene ID: Rep_3460_c_123_46
Type: CAZyme
Location: 42130 - 43305 (-)
Gene ID: Rep_3460_c_123_47
Type:
Location: 43445 - 44044 (-)
Gene ID: Rep_3460_c_123_48
Type: TC
Location: 44088 - 44651 (-)
Gene ID: Rep_3460_c_123_49
Type: pfam
Location: 44675 - 46816 (-)
Gene ID: Rep_3460_c_123_50
Type: TF
Location: 47470 - 47700 (+)
Gene ID: Rep_3460_c_123_51
Type: TC
Location: 48382 - 49029 (+)
Gene ID: Rep_3460_c_123_52
Type: pfam
Location: 49109 - 49768 (-)
Gene ID: Rep_3460_c_123_53
Type: TC
Location: 49913 - 50389 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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