Cluster: Rep_3460_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3460
- CGC Family ID: CGCFAM_01880
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3460_c_114 | Rep_3460_c_114_1 | 157 | 1434 | - | CE4 |
| TC | Rep_3460_c_114 | Rep_3460_c_114_2 | 1424 | 2806 | - | 2.A.66.1.33 |
| CAZyme | Rep_3460_c_114 | Rep_3460_c_114_3 | 3086 | 4426 | + | GH25 |
| NULL(UNKNOWN) | Rep_3460_c_114 | Rep_3460_c_114_4 | 4534 | 4785 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3460_c_114 | Rep_3460_c_114_5 | 4937 | 6313 | - | 2.A.66.1.37 |
Gene ID: Rep_3460_c_114_1
Type: CAZyme
Location: 157 - 1434 (-)
Type: CAZyme
Location: 157 - 1434 (-)
Gene ID: Rep_3460_c_114_2
Type: TC
Location: 1424 - 2806 (-)
Type: TC
Location: 1424 - 2806 (-)
Gene ID: Rep_3460_c_114_3
Type: CAZyme
Location: 3086 - 4426 (+)
Type: CAZyme
Location: 3086 - 4426 (+)
Gene ID: Rep_3460_c_114_4
Type:
Location: 4534 - 4785 (-)
Type:
Location: 4534 - 4785 (-)
Gene ID: Rep_3460_c_114_5
Type: TC
Location: 4937 - 6313 (-)
Type: TC
Location: 4937 - 6313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.