Cluster: Rep_3460_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3460
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3460_c_109 | Rep_3460_c_109_12 | 12634 | 14010 | + | 2.A.66.1.32 |
| pfam | Rep_3460_c_109 | Rep_3460_c_109_13 | 14083 | 15288 | - | Sacchrp_dh_NADP | Sacchrp_dh_C |
| CAZyme | Rep_3460_c_109 | Rep_3460_c_109_14 | 15383 | 17263 | - | GH13_39 |
| CAZyme | Rep_3460_c_109 | Rep_3460_c_109_15 | 17361 | 19760 | - | GT35 |
| TC | Rep_3460_c_109 | Rep_3460_c_109_16 | 19969 | 20634 | - | 3.A.3.1.8 |
Gene ID: Rep_3460_c_109_12
Type: TC
Location: 12634 - 14010 (+)
Type: TC
Location: 12634 - 14010 (+)
Gene ID: Rep_3460_c_109_13
Type: pfam
Location: 14083 - 15288 (-)
Type: pfam
Location: 14083 - 15288 (-)
Gene ID: Rep_3460_c_109_14
Type: CAZyme
Location: 15383 - 17263 (-)
Type: CAZyme
Location: 15383 - 17263 (-)
Gene ID: Rep_3460_c_109_15
Type: CAZyme
Location: 17361 - 19760 (-)
Type: CAZyme
Location: 17361 - 19760 (-)
Gene ID: Rep_3460_c_109_16
Type: TC
Location: 19969 - 20634 (-)
Type: TC
Location: 19969 - 20634 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.