Cluster: Rep_3460_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3460
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3460_c_4 | Rep_3460_c_4_6 | 5782 | 7200 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | Rep_3460_c_4 | Rep_3460_c_4_7 | 7541 | 7891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3460_c_4 | Rep_3460_c_4_8 | 7888 | 8796 | - | DAGK_cat | YegS_C |
| CAZyme | Rep_3460_c_4 | Rep_3460_c_4_9 | 8924 | 9976 | - | CE4 |
| pfam | Rep_3460_c_4 | Rep_3460_c_4_10 | 10058 | 10765 | - | DUF6796 |
| pfam | Rep_3460_c_4 | Rep_3460_c_4_11 | 10886 | 12073 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | Rep_3460_c_4 | Rep_3460_c_4_12 | 12175 | 14022 | - | 1.A.33.1.4 |
| TC | Rep_3460_c_4 | Rep_3460_c_4_13 | 14097 | 14657 | - | 3.A.8.1.1 |
Gene ID: Rep_3460_c_4_6
Type: TC
Location: 5782 - 7200 (-)
Type: TC
Location: 5782 - 7200 (-)
Gene ID: Rep_3460_c_4_7
Type:
Location: 7541 - 7891 (-)
Type:
Location: 7541 - 7891 (-)
Gene ID: Rep_3460_c_4_8
Type: pfam
Location: 7888 - 8796 (-)
Type: pfam
Location: 7888 - 8796 (-)
Gene ID: Rep_3460_c_4_9
Type: CAZyme
Location: 8924 - 9976 (-)
Type: CAZyme
Location: 8924 - 9976 (-)
Gene ID: Rep_3460_c_4_10
Type: pfam
Location: 10058 - 10765 (-)
Type: pfam
Location: 10058 - 10765 (-)
Gene ID: Rep_3460_c_4_11
Type: pfam
Location: 10886 - 12073 (-)
Type: pfam
Location: 10886 - 12073 (-)
Gene ID: Rep_3460_c_4_12
Type: TC
Location: 12175 - 14022 (-)
Type: TC
Location: 12175 - 14022 (-)
Gene ID: Rep_3460_c_4_13
Type: TC
Location: 14097 - 14657 (-)
Type: TC
Location: 14097 - 14657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.