Cluster: Rep_3459_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3459
- CGC Family ID: CGCFAM_02484
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3459_c_20 | Rep_3459_c_20_1 | 196 | 2547 | + | 3.A.5.2.2 |
| pfam | Rep_3459_c_20 | Rep_3459_c_20_2 | 2554 | 3927 | + | MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical |
| NULL(UNKNOWN) | Rep_3459_c_20 | Rep_3459_c_20_3 | 4047 | 4250 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3459_c_20 | Rep_3459_c_20_4 | 4250 | 5440 | - | GH27 |
Gene ID: Rep_3459_c_20_1
Type: TC
Location: 196 - 2547 (+)
Type: TC
Location: 196 - 2547 (+)
Gene ID: Rep_3459_c_20_2
Type: pfam
Location: 2554 - 3927 (+)
Type: pfam
Location: 2554 - 3927 (+)
Gene ID: Rep_3459_c_20_3
Type:
Location: 4047 - 4250 (-)
Type:
Location: 4047 - 4250 (-)
Gene ID: Rep_3459_c_20_4
Type: CAZyme
Location: 4250 - 5440 (-)
Type: CAZyme
Location: 4250 - 5440 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.