Cluster: Rep_3459_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3459
- CGC Family ID: CGCFAM_00271
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3459_c_18 | Rep_3459_c_18_15 | 15416 | 16081 | + | 3.A.3.1.8 |
| CAZyme | Rep_3459_c_18 | Rep_3459_c_18_16 | 16290 | 18689 | + | GT35 |
| CAZyme | Rep_3459_c_18 | Rep_3459_c_18_17 | 18789 | 20669 | + | GH13_39 |
| pfam | Rep_3459_c_18 | Rep_3459_c_18_18 | 20764 | 21969 | + | Sacchrp_dh_NADP | Sacchrp_dh_C |
| TC | Rep_3459_c_18 | Rep_3459_c_18_19 | 22027 | 23403 | - | 2.A.66.1.32 |
Gene ID: Rep_3459_c_18_15
Type: TC
Location: 15416 - 16081 (+)
Type: TC
Location: 15416 - 16081 (+)
Gene ID: Rep_3459_c_18_16
Type: CAZyme
Location: 16290 - 18689 (+)
Type: CAZyme
Location: 16290 - 18689 (+)
Gene ID: Rep_3459_c_18_17
Type: CAZyme
Location: 18789 - 20669 (+)
Type: CAZyme
Location: 18789 - 20669 (+)
Gene ID: Rep_3459_c_18_18
Type: pfam
Location: 20764 - 21969 (+)
Type: pfam
Location: 20764 - 21969 (+)
Gene ID: Rep_3459_c_18_19
Type: TC
Location: 22027 - 23403 (-)
Type: TC
Location: 22027 - 23403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.