Cluster: Rep_3459_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3459
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3459_c_156 | Rep_3459_c_156_2 | 1336 | 2043 | + | 3.A.1.3.15 |
| TC | Rep_3459_c_156 | Rep_3459_c_156_3 | 2056 | 2817 | + | 3.A.1.3.14 |
| CAZyme | Rep_3459_c_156 | Rep_3459_c_156_4 | 2902 | 3906 | + | GT4 |
| pfam | Rep_3459_c_156 | Rep_3459_c_156_5 | 3964 | 4686 | - | Metallophos |
| pfam | Rep_3459_c_156 | Rep_3459_c_156_6 | 4836 | 5327 | - | dCMP_cyt_deam_1 | MafB19-deam |
| TC | Rep_3459_c_156 | Rep_3459_c_156_7 | 5459 | 7237 | - | 2.A.58.2.2 |
Gene ID: Rep_3459_c_156_2
Type: TC
Location: 1336 - 2043 (+)
Type: TC
Location: 1336 - 2043 (+)
Gene ID: Rep_3459_c_156_3
Type: TC
Location: 2056 - 2817 (+)
Type: TC
Location: 2056 - 2817 (+)
Gene ID: Rep_3459_c_156_4
Type: CAZyme
Location: 2902 - 3906 (+)
Type: CAZyme
Location: 2902 - 3906 (+)
Gene ID: Rep_3459_c_156_5
Type: pfam
Location: 3964 - 4686 (-)
Type: pfam
Location: 3964 - 4686 (-)
Gene ID: Rep_3459_c_156_6
Type: pfam
Location: 4836 - 5327 (-)
Type: pfam
Location: 4836 - 5327 (-)
Gene ID: Rep_3459_c_156_7
Type: TC
Location: 5459 - 7237 (-)
Type: TC
Location: 5459 - 7237 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.