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Cluster: Rep_3459_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3459_c_141 Rep_3459_c_141_45 43125 44249 + GH26
pfam Rep_3459_c_141 Rep_3459_c_141_46 44246 44839 + DUF4358
TC Rep_3459_c_141 Rep_3459_c_141_47 44843 46000 + 2.A.1.60.3
pfam Rep_3459_c_141 Rep_3459_c_141_48 46193 47974 + tRNA-synt_2 | tRNA_anti-codon | GAD
TC Rep_3459_c_141 Rep_3459_c_141_49 48029 50026 + 1.B.52.2.1
pfam Rep_3459_c_141 Rep_3459_c_141_50 50507 51409 + Spore_III_AA
pfam Rep_3459_c_141 Rep_3459_c_141_51 51406 51900 + Spore_III_AB
TC Rep_3459_c_141 Rep_3459_c_141_52 51917 52111 + 9.B.70.1.1
Gene ID: Rep_3459_c_141_45
Type: CAZyme
Location: 43125 - 44249 (+)
Gene ID: Rep_3459_c_141_46
Type: pfam
Location: 44246 - 44839 (+)
Gene ID: Rep_3459_c_141_47
Type: TC
Location: 44843 - 46000 (+)
Gene ID: Rep_3459_c_141_48
Type: pfam
Location: 46193 - 47974 (+)
Gene ID: Rep_3459_c_141_49
Type: TC
Location: 48029 - 50026 (+)
Gene ID: Rep_3459_c_141_50
Type: pfam
Location: 50507 - 51409 (+)
Gene ID: Rep_3459_c_141_51
Type: pfam
Location: 51406 - 51900 (+)
Gene ID: Rep_3459_c_141_52
Type: TC
Location: 51917 - 52111 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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