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Cluster: Rep_3459_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3459_c_96 Rep_3459_c_96_2 722 1498 + 3.A.1.17.8
TC Rep_3459_c_96 Rep_3459_c_96_3 1495 2238 + 3.A.1.17.13
TC Rep_3459_c_96 Rep_3459_c_96_4 2240 3286 + 3.A.1.17.3
pfam Rep_3459_c_96 Rep_3459_c_96_5 3340 3750 - Pep_deformylase
CAZyme Rep_3459_c_96 Rep_3459_c_96_6 4178 5530 + GH43_35
TF Rep_3459_c_96 Rep_3459_c_96_7 5556 6350 + HTH_AraC | HTH_AraC
CAZyme Rep_3459_c_96 Rep_3459_c_96_8 6363 7544 + GH5_4
Gene ID: Rep_3459_c_96_2
Type: TC
Location: 722 - 1498 (+)
Gene ID: Rep_3459_c_96_3
Type: TC
Location: 1495 - 2238 (+)
Gene ID: Rep_3459_c_96_4
Type: TC
Location: 2240 - 3286 (+)
Gene ID: Rep_3459_c_96_5
Type: pfam
Location: 3340 - 3750 (-)
Gene ID: Rep_3459_c_96_6
Type: CAZyme
Location: 4178 - 5530 (+)
Gene ID: Rep_3459_c_96_7
Type: TF
Location: 5556 - 6350 (+)
Gene ID: Rep_3459_c_96_8
Type: CAZyme
Location: 6363 - 7544 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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