Cluster: Rep_3459_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3459
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3459_c_87 | Rep_3459_c_87_2 | 1639 | 2829 | - | GH3 |
| TC | Rep_3459_c_87 | Rep_3459_c_87_3 | 2845 | 4611 | - | 3.A.1.106.3 |
| TC | Rep_3459_c_87 | Rep_3459_c_87_4 | 4612 | 6366 | - | 3.A.1.106.3 |
Gene ID: Rep_3459_c_87_2
Type: CAZyme
Location: 1639 - 2829 (-)
Type: CAZyme
Location: 1639 - 2829 (-)
Gene ID: Rep_3459_c_87_3
Type: TC
Location: 2845 - 4611 (-)
Type: TC
Location: 2845 - 4611 (-)
Gene ID: Rep_3459_c_87_4
Type: TC
Location: 4612 - 6366 (-)
Type: TC
Location: 4612 - 6366 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3459_c_87_2 | vegan > omnivore | 18.60427 | 0.02973 |