Cluster: Rep_3459_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3459
- CGC Family ID: CGCFAM_11093
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3459_c_48 | Rep_3459_c_48_4 | 3334 | 4113 | - | 3.A.1.7.5 |
| TC | Rep_3459_c_48 | Rep_3459_c_48_5 | 4143 | 5051 | - | 3.A.1.7.5 |
| TC | Rep_3459_c_48 | Rep_3459_c_48_6 | 5058 | 6053 | - | 3.A.1.7.5 |
| STP | Rep_3459_c_48 | Rep_3459_c_48_7 | 6160 | 7056 | - | SBP_bac_1 |
| NULL(UNKNOWN) | Rep_3459_c_48 | Rep_3459_c_48_8 | 7412 | 8503 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3459_c_48 | Rep_3459_c_48_9 | 8579 | 9586 | - | GH130_2 |
Gene ID: Rep_3459_c_48_4
Type: TC
Location: 3334 - 4113 (-)
Type: TC
Location: 3334 - 4113 (-)
Gene ID: Rep_3459_c_48_5
Type: TC
Location: 4143 - 5051 (-)
Type: TC
Location: 4143 - 5051 (-)
Gene ID: Rep_3459_c_48_6
Type: TC
Location: 5058 - 6053 (-)
Type: TC
Location: 5058 - 6053 (-)
Gene ID: Rep_3459_c_48_7
Type: STP
Location: 6160 - 7056 (-)
Type: STP
Location: 6160 - 7056 (-)
Gene ID: Rep_3459_c_48_8
Type:
Location: 7412 - 8503 (+)
Type:
Location: 7412 - 8503 (+)
Gene ID: Rep_3459_c_48_9
Type: CAZyme
Location: 8579 - 9586 (-)
Type: CAZyme
Location: 8579 - 9586 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.