Cluster: Rep_3457_CGC37
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_2934 | 3202795 | 3205263 | + | 3.A.3.30.3 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_2935 | 3205285 | 3206382 | + | VCA0040-like | VCA0040-like |
| TC | Rep_3457_c_0 | Rep_3457_c_0_2936 | 3206521 | 3207417 | + | 3.A.1.121.4 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_2937 | 3207460 | 3208422 | - | GT2 |
Gene ID: Rep_3457_c_0_2934
Type: TC
Location: 3202795 - 3205263 (+)
Type: TC
Location: 3202795 - 3205263 (+)
Gene ID: Rep_3457_c_0_2935
Type: pfam
Location: 3205285 - 3206382 (+)
Type: pfam
Location: 3205285 - 3206382 (+)
Gene ID: Rep_3457_c_0_2936
Type: TC
Location: 3206521 - 3207417 (+)
Type: TC
Location: 3206521 - 3207417 (+)
Gene ID: Rep_3457_c_0_2937
Type: CAZyme
Location: 3207460 - 3208422 (-)
Type: CAZyme
Location: 3207460 - 3208422 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3457_c_0_2937 | vegan > omnivore | 1.10402 | 0.04766 |