Cluster: Rep_3457_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_2629 | 2901736 | 2902404 | + | 3.A.1.122.14 |
| TF | Rep_3457_c_0 | Rep_3457_c_0_2630 | 2902881 | 2905007 | - | HTH_AraC |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_2631 | 2905267 | 2906184 | + | GH43_16 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_2632 | 2906218 | 2906661 | + | CBM_6 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_2633 | 2906673 | 2908790 | + | GH43_16 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_2634 | 2908820 | 2910589 | + | CBM91 | GH43_10 |
Gene ID: Rep_3457_c_0_2629
Type: TC
Location: 2901736 - 2902404 (+)
Type: TC
Location: 2901736 - 2902404 (+)
Gene ID: Rep_3457_c_0_2630
Type: TF
Location: 2902881 - 2905007 (-)
Type: TF
Location: 2902881 - 2905007 (-)
Gene ID: Rep_3457_c_0_2631
Type: CAZyme
Location: 2905267 - 2906184 (+)
Type: CAZyme
Location: 2905267 - 2906184 (+)
Gene ID: Rep_3457_c_0_2632
Type: pfam
Location: 2906218 - 2906661 (+)
Type: pfam
Location: 2906218 - 2906661 (+)
Gene ID: Rep_3457_c_0_2633
Type: CAZyme
Location: 2906673 - 2908790 (+)
Type: CAZyme
Location: 2906673 - 2908790 (+)
Gene ID: Rep_3457_c_0_2634
Type: CAZyme
Location: 2908820 - 2910589 (+)
Type: CAZyme
Location: 2908820 - 2910589 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.