Cluster: Rep_3457_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_147 | 199508 | 200266 | - | 3.A.1.103.1 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_148 | 200279 | 201598 | - | ABC2_membrane |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_149 | 201760 | 202590 | - | GT2 |
| NULL(UNKNOWN) | Rep_3457_c_0 | Rep_3457_c_0_150 | 202542 | 203888 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_151 | 203875 | 205053 | - | GT4 |
Gene ID: Rep_3457_c_0_147
Type: TC
Location: 199508 - 200266 (-)
Type: TC
Location: 199508 - 200266 (-)
Gene ID: Rep_3457_c_0_148
Type: pfam
Location: 200279 - 201598 (-)
Type: pfam
Location: 200279 - 201598 (-)
Gene ID: Rep_3457_c_0_149
Type: CAZyme
Location: 201760 - 202590 (-)
Type: CAZyme
Location: 201760 - 202590 (-)
Gene ID: Rep_3457_c_0_150
Type:
Location: 202542 - 203888 (-)
Type:
Location: 202542 - 203888 (-)
Gene ID: Rep_3457_c_0_151
Type: CAZyme
Location: 203875 - 205053 (-)
Type: CAZyme
Location: 203875 - 205053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.