Cluster: Rep_3457_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_2453 | 2712385 | 2714250 | - | 3.A.1.135.5 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_2454 | 2714243 | 2715994 | - | 3.A.1.135.5 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_2455 | 2716182 | 2717045 | + | PDH_N | NAD_binding_2 | PDH_C |
| NULL(UNKNOWN) | Rep_3457_c_0 | Rep_3457_c_0_2456 | 2717047 | 2717601 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_2457 | 2717826 | 2720156 | + | GH95 |
Gene ID: Rep_3457_c_0_2453
Type: TC
Location: 2712385 - 2714250 (-)
Type: TC
Location: 2712385 - 2714250 (-)
Gene ID: Rep_3457_c_0_2454
Type: TC
Location: 2714243 - 2715994 (-)
Type: TC
Location: 2714243 - 2715994 (-)
Gene ID: Rep_3457_c_0_2455
Type: pfam
Location: 2716182 - 2717045 (+)
Type: pfam
Location: 2716182 - 2717045 (+)
Gene ID: Rep_3457_c_0_2456
Type:
Location: 2717047 - 2717601 (+)
Type:
Location: 2717047 - 2717601 (+)
Gene ID: Rep_3457_c_0_2457
Type: CAZyme
Location: 2717826 - 2720156 (+)
Type: CAZyme
Location: 2717826 - 2720156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.