Cluster: Rep_3457_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_1814 | 2041143 | 2042885 | + | 3.A.2.3.2 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_1815 | 2042906 | 2044297 | + | 3.A.2.3.3 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_1816 | 2044327 | 2044980 | + | 3.A.2.3.2 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_1817 | 2045039 | 2046577 | - | GH13_44 |
Gene ID: Rep_3457_c_0_1814
Type: TC
Location: 2041143 - 2042885 (+)
Type: TC
Location: 2041143 - 2042885 (+)
Gene ID: Rep_3457_c_0_1815
Type: TC
Location: 2042906 - 2044297 (+)
Type: TC
Location: 2042906 - 2044297 (+)
Gene ID: Rep_3457_c_0_1816
Type: TC
Location: 2044327 - 2044980 (+)
Type: TC
Location: 2044327 - 2044980 (+)
Gene ID: Rep_3457_c_0_1817
Type: CAZyme
Location: 2045039 - 2046577 (-)
Type: CAZyme
Location: 2045039 - 2046577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3457_c_0_1814 | vegan > omnivore | 1.09079 | 0.04650 |