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Cluster: Rep_3457_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3457_c_0 Rep_3457_c_0_1218 1382777 1383637 + 3.A.11.1.2
NULL(UNKNOWN) Rep_3457_c_0 Rep_3457_c_0_1219 1383757 1384029 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3457_c_0 Rep_3457_c_0_1220 1384192 1384647 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
CAZyme Rep_3457_c_0 Rep_3457_c_0_1221 1384824 1386899 + GH3
STP Rep_3457_c_0 Rep_3457_c_0_1222 1386941 1387735 - PfkB
TF Rep_3457_c_0 Rep_3457_c_0_1223 1388002 1388340 + HTH_11
TC Rep_3457_c_0 Rep_3457_c_0_1224 1388356 1389723 + 3.A.5.1.1
Gene ID: Rep_3457_c_0_1218
Type: TC
Location: 1382777 - 1383637 (+)
Gene ID: Rep_3457_c_0_1219
Type:
Location: 1383757 - 1384029 (+)
Gene ID: Rep_3457_c_0_1220
Type: pfam
Location: 1384192 - 1384647 (+)
Gene ID: Rep_3457_c_0_1221
Type: CAZyme
Location: 1384824 - 1386899 (+)
Gene ID: Rep_3457_c_0_1222
Type: STP
Location: 1386941 - 1387735 (-)
Gene ID: Rep_3457_c_0_1223
Type: TF
Location: 1388002 - 1388340 (+)
Gene ID: Rep_3457_c_0_1224
Type: TC
Location: 1388356 - 1389723 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3457_c_0_1220 vegan > omnivore 1.37824 0.04575

🧭 Explore Read Mapping of CGC

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