Cluster: Rep_3457_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_935 | 1095215 | 1096600 | - | 2.A.66.1.33 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_936 | 1096880 | 1098220 | + | GH25 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_937 | 1098456 | 1099226 | + | DpnI | DpnI_C |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_938 | 1099223 | 1099921 | + | UPF0020 | N6_N4_Mtase | N6_N4_Mtase | Methyltransf_11 | Methyltransf_31 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_939 | 1099988 | 1101382 | - | 2.A.66.1.37 |
Gene ID: Rep_3457_c_0_935
Type: TC
Location: 1095215 - 1096600 (-)
Type: TC
Location: 1095215 - 1096600 (-)
Gene ID: Rep_3457_c_0_936
Type: CAZyme
Location: 1096880 - 1098220 (+)
Type: CAZyme
Location: 1096880 - 1098220 (+)
Gene ID: Rep_3457_c_0_937
Type: pfam
Location: 1098456 - 1099226 (+)
Type: pfam
Location: 1098456 - 1099226 (+)
Gene ID: Rep_3457_c_0_938
Type: pfam
Location: 1099223 - 1099921 (+)
Type: pfam
Location: 1099223 - 1099921 (+)
Gene ID: Rep_3457_c_0_939
Type: TC
Location: 1099988 - 1101382 (-)
Type: TC
Location: 1099988 - 1101382 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.