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Cluster: Rep_3457_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3457_c_0 Rep_3457_c_0_29 34458 36422 + 9.B.34.1.2
CAZyme Rep_3457_c_0 Rep_3457_c_0_30 36608 37408 + GT2
CAZyme Rep_3457_c_0 Rep_3457_c_0_31 37408 38430 + GT2
TC Rep_3457_c_0 Rep_3457_c_0_32 38442 39242 + 3.A.1.103.4
TC Rep_3457_c_0 Rep_3457_c_0_33 39256 39996 + 3.A.1.103.1
pfam Rep_3457_c_0 Rep_3457_c_0_34 40647 41468 + LicD
pfam Rep_3457_c_0 Rep_3457_c_0_35 41507 41899 + CTP_transf_like
CAZyme Rep_3457_c_0 Rep_3457_c_0_36 41945 44371 + GT4
Gene ID: Rep_3457_c_0_29
Type: TC
Location: 34458 - 36422 (+)
Gene ID: Rep_3457_c_0_30
Type: CAZyme
Location: 36608 - 37408 (+)
Gene ID: Rep_3457_c_0_31
Type: CAZyme
Location: 37408 - 38430 (+)
Gene ID: Rep_3457_c_0_32
Type: TC
Location: 38442 - 39242 (+)
Gene ID: Rep_3457_c_0_33
Type: TC
Location: 39256 - 39996 (+)
Gene ID: Rep_3457_c_0_34
Type: pfam
Location: 40647 - 41468 (+)
Gene ID: Rep_3457_c_0_35
Type: pfam
Location: 41507 - 41899 (+)
Gene ID: Rep_3457_c_0_36
Type: CAZyme
Location: 41945 - 44371 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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