dbCAN Logo

Cluster: Rep_344_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_344_c_38 Rep_344_c_38_1 380 3160 + GH13
STP Rep_344_c_38 Rep_344_c_38_2 3245 4570 - EPSP_synthase
pfam Rep_344_c_38 Rep_344_c_38_3 4590 5657 - FAD_binding_4 | MurB_C
TC Rep_344_c_38 Rep_344_c_38_4 5608 6261 - 2.A.115.2.14
pfam Rep_344_c_38 Rep_344_c_38_5 6309 6593 - PQ-loop
CAZyme Rep_344_c_38 Rep_344_c_38_6 6684 7808 - GT19
CAZyme Rep_344_c_38 Rep_344_c_38_7 7808 9829 - GH13_8
Gene ID: Rep_344_c_38_1
Type: CAZyme
Location: 380 - 3160 (+)
Gene ID: Rep_344_c_38_2
Type: STP
Location: 3245 - 4570 (-)
Gene ID: Rep_344_c_38_3
Type: pfam
Location: 4590 - 5657 (-)
Gene ID: Rep_344_c_38_4
Type: TC
Location: 5608 - 6261 (-)
Gene ID: Rep_344_c_38_5
Type: pfam
Location: 6309 - 6593 (-)
Gene ID: Rep_344_c_38_6
Type: CAZyme
Location: 6684 - 7808 (-)
Gene ID: Rep_344_c_38_7
Type: CAZyme
Location: 7808 - 9829 (-)

Taxonomic Lineage

Domain
Bacteria

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List